Variant report
| Variant | rs17005001 |
|---|---|
| Chromosome Location | chr4:81840464-81840465 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs16998373 | 1.00[AFR][1000 genomes] |
| rs17005003 | 1.00[AFR][1000 genomes] |
| rs17005006 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17005008 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17005009 | 1.00[AFR][1000 genomes] |
| rs1908010 | 1.00[EUR][1000 genomes] |
| rs55893546 | 1.00[EUR][1000 genomes] |
| rs58091725 | 1.00[EUR][1000 genomes] |
| rs58584559 | 1.00[AFR][1000 genomes] |
| rs60281600 | 1.00[AFR][1000 genomes] |
| rs60356702 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73829187 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73829197 | 1.00[AFR][1000 genomes] |
| rs73829199 | 1.00[AFR][1000 genomes] |
| rs73829202 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73831203 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73831205 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73831206 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73831207 | 1.00[AFR][1000 genomes] |
| rs73831208 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73831212 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73831213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73831216 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv517072 | chr4:81793825-81890350 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2763370 | chr4:81800466-81866997 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv999729 | chr4:81802554-82627820 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv537156 | chr4:81802554-82627820 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 5 | esv3412549 | chr4:81834479-81951850 | Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv980456 | chr4:81840307-81843670 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:81839600-81844200 | Weak transcription | Ovary | ovary |
| 2 | chr4:81840000-81842400 | Weak transcription | NHEK | skin |
| 3 | chr4:81840000-81842800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
