Variant report

Variant	rs17005035
Chromosome Location	chr4:81973364-81973365
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10516736	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005020	0.82[ASN][1000 genomes]
rs17005025	1.00[ASN][1000 genomes]
rs4693791	0.82[ASN][1000 genomes]
rs58776991	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59640859	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814223	0.82[ASN][1000 genomes]
rs6827935	0.82[ASN][1000 genomes]
rs6845445	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:81961600-81973400	Weak transcription	Fetal Intestine Small	intestine
4	chr4:81967600-81973400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:81968400-81973400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:81969400-81973800	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:81971400-81973400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:81971400-81974200	Enhancers	Colon Smooth Muscle	Colon
9	chr4:81971600-81973400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:81971600-81983000	Weak transcription	Ovary	ovary
11	chr4:81971800-81973400	Weak transcription	Adipose Nuclei	Adipose
12	chr4:81972000-81990800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:81972800-81973600	Enhancers	GM12878-XiMat	blood
14	chr4:81973000-81973400	Enhancers	Liver	Liver
15	chr4:81973000-81973600	Active TSS	Duodenum Mucosa	Duodenum
16	chr4:81973000-81974400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr4:81973200-81973800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:81973200-81974000	Enhancers	Primary B cells from peripheral blood	blood
19	chr4:81973200-81974600	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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