Variant report

Variant	rs17005055
Chromosome Location	chr4:82028258-82028259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11936331	0.87[AFR][1000 genomes]
rs11938487	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs11939393	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs11941413	0.85[AFR][1000 genomes]
rs11945501	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs11945532	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs11947094	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs1808945	0.85[AFR][1000 genomes]
rs55888410	0.88[AFR][1000 genomes]
rs56371568	0.88[AFR][1000 genomes]
rs58173071	0.86[AFR][1000 genomes]
rs6811773	0.88[AFR][1000 genomes]
rs6844442	0.85[AFR][1000 genomes]
rs70956092	0.87[AMR][1000 genomes]
rs73832605	0.87[AMR][1000 genomes]
rs73832610	0.88[AFR][1000 genomes]
rs73832611	0.88[AFR][1000 genomes]
rs73832613	0.88[AFR][1000 genomes]
rs73832615	0.88[AFR][1000 genomes]
rs73832618	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829984	chr4:81979988-82113977	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv1822437	chr4:82025743-82118996	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81998200-82030000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:82013000-82033200	Weak transcription	NHLF	lung
3	chr4:82017600-82028600	Weak transcription	Fetal Intestine Small	intestine
4	chr4:82021600-82029000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:82025400-82051600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:82025800-82028600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:82027800-82032600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:82028000-82032800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:82028200-82035000	Weak transcription	NHDF-Ad	bronchial
10	chr4:82028200-82050600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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