Variant report

Variant	rs17005825
Chromosome Location	chr3:69454416-69454417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10510974	1.00[AMR][1000 genomes]
rs11921571	1.00[AMR][1000 genomes]
rs11926441	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005793	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005804	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005829	1.00[AMR][1000 genomes]
rs17005849	1.00[AMR][1000 genomes]
rs17043802	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937857	1.00[AMR][1000 genomes]
rs72937895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69450600-69461400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:69453000-69454600	Weak transcription	Gastric	stomach
3	chr3:69453800-69454800	ZNF genes & repeats	Brain Hippocampus Middle	brain
4	chr3:69453800-69454800	ZNF genes & repeats	Fetal Brain Female	brain
5	chr3:69453800-69455000	ZNF genes & repeats	Brain Germinal Matrix	brain
6	chr3:69453800-69455000	ZNF genes & repeats	Fetal Brain Male	brain
7	chr3:69453800-69455000	ZNF genes & repeats	Fetal Lung	lung
8	chr3:69453800-69455600	ZNF genes & repeats	HMEC	breast
9	chr3:69453800-69456200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:69454000-69454600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr3:69454000-69454800	ZNF genes & repeats	Brain Substantia Nigra	brain
12	chr3:69454000-69455000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:69454200-69454600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:69454200-69454800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:69454200-69455000	ZNF genes & repeats	NHEK	skin
16	chr3:69454400-69454800	ZNF genes & repeats	Lung	lung
17	chr3:69454400-69454800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr3:69454400-69455000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
19	chr3:69454400-69455000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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