Variant report

Variant	rs17007855
Chromosome Location	chr1:220683967-220683968
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220671675..220674982-chr1:220683924..220687584,3	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1073460	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes]
rs10746403	0.80[TSI][hapmap]
rs10779408	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10779409	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118563	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12047297	0.85[AMR][1000 genomes]
rs12048541	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12405059	0.90[JPT][hapmap]
rs12568419	0.91[JPT][hapmap]
rs12726257	0.81[JPT][hapmap]
rs12753927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758833	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17007839	0.89[AFR][1000 genomes]
rs17007842	0.89[AFR][1000 genomes]
rs17007885	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1933002	0.82[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs1933008	0.83[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs2253641	0.82[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs2378401	0.87[CHB][hapmap]
rs2589578	0.86[EUR][1000 genomes]
rs2589586	0.80[TSI][hapmap]
rs2589588	0.81[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589589	0.80[TSI][hapmap]
rs2786601	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786604	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs2786606	0.80[TSI][hapmap]
rs2786607	0.81[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs2786609	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786613	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs2786617	0.80[TSI][hapmap]
rs2786619	0.82[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2889928	0.90[EUR][1000 genomes]
rs2993209	0.82[EUR][1000 genomes]
rs35327085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35553664	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3737296	0.81[JPT][hapmap]
rs4011894	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs4846657	0.81[JPT][hapmap];0.92[TSI][hapmap]
rs6541155	0.87[CHB][hapmap];0.82[CHD][hapmap];0.89[TSI][hapmap]
rs6695068	0.82[AFR][1000 genomes]
rs6699189	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6699196	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7514431	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs7532064	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9431262	0.86[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220680800-220684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:220683200-220689800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links