The 2.0 version of rSNPBase

Variant report

Variant rs17008083
Chromosome Location chr1:220791481-220791482
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220749800-220799000 Weak transcription Aorta Aorta
2 chr1:220751800-220799000 Weak transcription Fetal Stomach stomach
3 chr1:220752600-220808600 Weak transcription Left Ventricle heart
4 chr1:220761200-220799200 Weak transcription H1 Cell Line embryonic stem cell
5 chr1:220767400-220798600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:220767600-220799000 Weak transcription Fetal Muscle Trunk muscle
7 chr1:220767800-220826400 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:220768000-220804600 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr1:220768000-220813800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr1:220768200-220791600 Weak transcription Brain Germinal Matrix brain
11 chr1:220768400-220799000 Weak transcription Adipose Nuclei Adipose
12 chr1:220774000-220796000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr1:220776000-220798800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr1:220777200-220793200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:220778000-220793600 Weak transcription Colon Smooth Muscle Colon
16 chr1:220778800-220837200 Weak transcription NHEK skin
17 chr1:220781000-220791600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr1:220782800-220825800 Weak transcription Fetal Brain Male brain
19 chr1:220783200-220815000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:220783400-220791800 Weak transcription Stomach Smooth Muscle stomach
21 chr1:220784200-220836600 Weak transcription Fetal Lung lung
22 chr1:220784800-220799200 Weak transcription Fetal Muscle Leg muscle
23 chr1:220784800-220815000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr1:220785000-220791800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:220785000-220799200 Weak transcription Fetal Brain Female brain
26 chr1:220785000-220815400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr1:220785800-220808600 Weak transcription Brain Anterior Caudate brain
28 chr1:220786800-220799800 Weak transcription Fetal Heart heart
29 chr1:220788800-220799000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:220789800-220792400 Strong transcription Breast Myoepithelial Primary Cells Breast
31 chr1:220790600-220791600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:220790800-220791600 Enhancers iPS-15b Cell Line embryonic stem cell
33 chr1:220790800-220791600 Enhancers iPS-18 Cell Line embryonic stem cell
34 chr1:220790800-220795600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr1:220791000-220791600 Weak transcription HUES64 Cell Line embryonic stem cell
36 chr1:220791000-220794000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr1:220791000-220804200 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr1:220791200-220828600 Weak transcription Right Ventricle heart
39 chr1:220791200-220841200 Weak transcription HMEC breast
40 chr1:220791400-220792000 Weak transcription HUES48 Cell Line embryonic stem cell
41 chr1:220791400-220792600 Strong transcription Cortex derived primary cultured neurospheres brain
42 chr1:220791400-220801600 Weak transcription H9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015