The 2.0 version of rSNPBase

Variant report

Variant rs17008159
Chromosome Location chr1:220827514-220827515
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220778800-220837200 Weak transcription NHEK skin
2 chr1:220784200-220836600 Weak transcription Fetal Lung lung
3 chr1:220791200-220828600 Weak transcription Right Ventricle heart
4 chr1:220791200-220841200 Weak transcription HMEC breast
5 chr1:220792000-220834200 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:220796200-220827800 Weak transcription Gastric stomach
7 chr1:220798000-220836400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr1:220800000-220837800 Weak transcription Esophagus oesophagus
9 chr1:220807400-220829800 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:220807800-220828800 Weak transcription Colon Smooth Muscle Colon
11 chr1:220807800-220836400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:220813600-220836000 Weak transcription Brain Cingulate Gyrus brain
13 chr1:220815000-220827800 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr1:220815800-220837200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr1:220816000-220828000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr1:220816200-220836200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:220816600-220834200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:220816600-220836000 Weak transcription Fetal Kidney kidney
19 chr1:220819800-220828800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr1:220820400-220836600 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr1:220821600-220834600 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:220822000-220836800 Weak transcription Pancreas Pancrea
23 chr1:220823200-220828800 Strong transcription iPS-20b Cell Line embryonic stem cell
24 chr1:220823200-220829800 Strong transcription Cortex derived primary cultured neurospheres brain
25 chr1:220823200-220835800 Strong transcription Breast Myoepithelial Primary Cells Breast
26 chr1:220823400-220829600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr1:220823400-220830400 Strong transcription HUES64 Cell Line embryonic stem cell
28 chr1:220823400-220830600 Strong transcription HUES48 Cell Line embryonic stem cell
29 chr1:220823400-220835600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:220823800-220831000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:220824800-220829800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:220825000-220828200 Weak transcription Fetal Intestine Large intestine
33 chr1:220825400-220828000 Strong transcription iPS-18 Cell Line embryonic stem cell
34 chr1:220825400-220830600 Strong transcription Adipose Nuclei Adipose
35 chr1:220825600-220836200 Weak transcription Brain Hippocampus Middle brain
36 chr1:220825800-220827800 Strong transcription HUES6 Cell Line embryonic stem cell
37 chr1:220825800-220828600 Weak transcription Rectal Smooth Muscle rectum
38 chr1:220826000-220827600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:220826200-220827600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:220826200-220830600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:220826400-220827800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr1:220826400-220828400 Weak transcription Fetal Brain Male brain
43 chr1:220826400-220828600 Strong transcription H9 Cell Line embryonic stem cell
44 chr1:220826400-220829200 Strong transcription Left Ventricle heart
45 chr1:220826400-220829400 Strong transcription Duodenum Smooth Muscle Duodenum
46 chr1:220826400-220829600 Strong transcription Fetal Muscle Trunk muscle
47 chr1:220826400-220829600 Strong transcription Fetal Muscle Leg muscle
48 chr1:220826600-220828800 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:220826600-220828800 Weak transcription Brain Angular Gyrus brain
50 chr1:220826600-220829600 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015