The 2.0 version of rSNPBase

Variant report

Variant rs17008667
Chromosome Location chr1:220950244-220950245
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220922800-220959600 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr1:220922800-220959600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:220925000-220959400 Weak transcription Brain Angular Gyrus brain
4 chr1:220930000-220950400 Weak transcription H9 Cell Line embryonic stem cell
5 chr1:220930000-220959600 Weak transcription Psoas Muscle Psoas
6 chr1:220930400-220959600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr1:220931200-220959000 Weak transcription Brain Substantia Nigra brain
8 chr1:220936200-220959600 Weak transcription A549 lung
9 chr1:220936600-220958200 Weak transcription Esophagus oesophagus
10 chr1:220939000-220960400 Weak transcription Small Intestine intestine
11 chr1:220943000-220958400 Weak transcription HepG2 liver
12 chr1:220943000-220959000 Strong transcription Fetal Intestine Large intestine
13 chr1:220944200-220956000 Weak transcription Pancreas Pancrea
14 chr1:220944200-220959200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:220944200-220959400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:220944200-220959400 Weak transcription Fetal Kidney kidney
17 chr1:220944200-220959600 Weak transcription NHLF lung
18 chr1:220944200-220959800 Weak transcription Gastric stomach
19 chr1:220944400-220954600 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr1:220944400-220956000 Weak transcription Aorta Aorta
21 chr1:220944400-220956800 Weak transcription Spleen Spleen
22 chr1:220944400-220958800 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr1:220944400-220959000 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr1:220944400-220959200 Weak transcription Rectal Smooth Muscle rectum
25 chr1:220944400-220959400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr1:220944400-220959400 Weak transcription Colonic Mucosa Colon
27 chr1:220944400-220959400 Weak transcription Right Ventricle heart
28 chr1:220945000-220950400 Weak transcription Fetal Muscle Trunk muscle
29 chr1:220945000-220951800 Weak transcription Ovary ovary
30 chr1:220945600-220953200 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr1:220945800-220959200 Weak transcription Colon Smooth Muscle Colon
32 chr1:220946000-220956800 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr1:220946200-220950400 Weak transcription Fetal Lung lung
34 chr1:220946200-220951600 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr1:220946400-220953400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr1:220946400-220956200 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr1:220946600-220958600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr1:220946800-220958800 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:220947800-220952600 Weak transcription Stomach Smooth Muscle stomach
40 chr1:220948200-220950600 Weak transcription Fetal Stomach stomach
41 chr1:220948200-220950600 Weak transcription Lung lung
42 chr1:220948400-220950400 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr1:220948400-220950400 Weak transcription Fetal Heart heart
44 chr1:220948400-220951600 Weak transcription Left Ventricle heart
45 chr1:220948400-220953200 Weak transcription Adipose Nuclei Adipose
46 chr1:220949600-220950400 Weak transcription Primary B cells from cord blood blood
47 chr1:220949800-220950400 Enhancers Primary neutrophils fromperipheralblood blood
48 chr1:220949800-220954200 Strong transcription Fetal Intestine Small intestine
49 chr1:220950000-220950400 Enhancers Primary B cells from peripheral blood blood
50 chr1:220950000-220950400 Enhancers Brain Anterior Caudate brain

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Last update: Aug 31, 2015