Variant report

Variant	rs17009060
Chromosome Location	chr1:221099623-221099624
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10495153	0.85[EUR][1000 genomes]
rs10495154	0.85[EUR][1000 genomes]
rs11806418	0.97[EUR][1000 genomes]
rs11809417	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12565509	0.85[EUR][1000 genomes]
rs12566858	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12567705	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12568739	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17009037	0.90[EUR][1000 genomes]
rs17009078	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35014198	0.82[EUR][1000 genomes]
rs6678259	0.83[EUR][1000 genomes]
rs7418458	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs945447	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221095600-221100800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:221096600-221100200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:221096600-221100800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:221096600-221100800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:221098000-221100600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:221098000-221100600	Enhancers	NHDF-Ad	bronchial
7	chr1:221098200-221100400	Enhancers	Osteobl	bone
8	chr1:221098600-221100400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:221099000-221100200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:221099000-221100400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:221099000-221100600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:221099200-221099800	Enhancers	Adipose Nuclei	Adipose
13	chr1:221099200-221099800	Enhancers	Psoas Muscle	Psoas
14	chr1:221099200-221100000	Enhancers	Fetal Muscle Leg	muscle
15	chr1:221099200-221100200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:221099200-221100200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:221099200-221100200	Enhancers	HSMM	muscle
18	chr1:221099200-221100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:221099200-221102800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:221099400-221102800	Enhancers	Primary hematopoietic stem cells	blood
21	chr1:221099600-221101200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr1:221099600-221101200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr1:221099600-221102800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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