Variant report

Variant	rs17009943
Chromosome Location	chr10:50571123-50571124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17009939	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv526843	chr10:50570544-50585177	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50567200-50571600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:50567600-50572000	Enhancers	Pancreas	Pancrea
3	chr10:50568800-50573400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:50569400-50575600	Weak transcription	Right Atrium	heart
5	chr10:50569600-50571600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:50569600-50575800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:50569600-50577200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:50569800-50572000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:50569800-50572200	Enhancers	GM12878-XiMat	blood
10	chr10:50570000-50571200	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:50570200-50572400	Enhancers	HepG2	liver
12	chr10:50570200-50575600	Weak transcription	Right Ventricle	heart
13	chr10:50570400-50571200	Enhancers	Left Ventricle	heart
14	chr10:50570800-50571600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr10:50571000-50571200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:50571000-50571200	Enhancers	Spleen	Spleen
17	chr10:50571000-50571600	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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