Variant report
| Variant | rs17009968 |
|---|---|
| Chromosome Location | chr10:50583086-50583087 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10732632 | 0.86[EUR][1000 genomes] |
| rs10745260 | 0.86[EUR][1000 genomes] |
| rs17009940 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17009941 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17009956 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17009957 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17009961 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17010002 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1977293 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2889781 | 1.00[EUR][1000 genomes] |
| rs2889783 | 1.00[EUR][1000 genomes] |
| rs4562729 | 0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs58651064 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58733378 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59096752 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59572955 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59959035 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60811583 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61296942 | 0.80[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7900263 | 1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv526843 | chr10:50570544-50585177 | Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17009968 | DRGX | cis | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
