Variant report

Variant	rs17010002
Chromosome Location	chr10:50596070-50596071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10732632	0.86[EUR][1000 genomes]
rs10745260	0.86[EUR][1000 genomes]
rs17009940	1.00[EUR][1000 genomes]
rs17009941	1.00[EUR][1000 genomes]
rs17009956	1.00[EUR][1000 genomes]
rs17009957	1.00[EUR][1000 genomes]
rs17009961	1.00[EUR][1000 genomes]
rs1977293	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889781	1.00[EUR][1000 genomes]
rs2889783	1.00[EUR][1000 genomes]
rs4562729	1.00[EUR][1000 genomes]
rs58651064	1.00[EUR][1000 genomes]
rs58733378	1.00[EUR][1000 genomes]
rs59096752	1.00[EUR][1000 genomes]
rs59572955	1.00[EUR][1000 genomes]
rs59959035	1.00[EUR][1000 genomes]
rs60811583	1.00[EUR][1000 genomes]
rs61296942	0.86[EUR][1000 genomes]
rs7900263	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50593600-50596200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:50594800-50598000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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