Variant report

Variant	rs17010164
Chromosome Location	chr10:50779324-50779325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10400121	1.00[MEX][hapmap]
rs17010153	0.91[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs17010166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2377880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4253025	1.00[MEX][hapmap]
rs4253037	1.00[MEX][hapmap]
rs4253074	1.00[MEX][hapmap]
rs4253075	1.00[MEX][hapmap]
rs4253111	1.00[MEX][hapmap]
rs4253197	1.00[MEX][hapmap]
rs60818861	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7077212	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311033	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311042	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315031	1.00[AMR][1000 genomes]
rs73315059	1.00[AMR][1000 genomes]
rs73316911	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73319003	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50771800-50779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:50775600-50780400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:50777200-50780200	Enhancers	HMEC	breast
4	chr10:50777400-50779400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:50777800-50781200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr10:50778000-50779400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:50778000-50782600	Enhancers	Hela-S3	cervix
8	chr10:50778200-50779600	Weak transcription	NHEK	skin
9	chr10:50778600-50780000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:50778800-50779800	Enhancers	Osteobl	bone
11	chr10:50778800-50780600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:50779000-50782000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:50779200-50780200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:50779200-50780200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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