Variant report

Variant	rs17010311
Chromosome Location	chr4:86440373-86440374
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10013096	0.82[JPT][hapmap]
rs10026950	0.82[JPT][hapmap]
rs10516749	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs10516751	0.82[JPT][hapmap];0.80[YRI][hapmap]
rs11931565	0.85[JPT][hapmap]
rs11932352	0.85[JPT][hapmap];0.81[YRI][hapmap]
rs11936036	0.85[JPT][hapmap];0.81[YRI][hapmap]
rs11942163	0.82[YRI][hapmap]
rs11945019	0.81[YRI][hapmap]
rs1481776	0.82[JPT][hapmap]
rs1481782	0.82[JPT][hapmap]
rs1548106	0.85[JPT][hapmap]
rs17010358	0.82[JPT][hapmap]
rs17010359	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs17010389	0.82[YRI][hapmap]
rs17010393	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs17010402	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs17010406	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs1905033	0.85[JPT][hapmap]
rs1982699	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs1982700	0.84[YRI][hapmap]
rs1982701	0.82[JPT][hapmap];0.80[YRI][hapmap]
rs1994062	0.80[YRI][hapmap]
rs1994064	0.81[YRI][hapmap]
rs1994069	0.82[JPT][hapmap]
rs1994070	0.85[JPT][hapmap]
rs1994072	0.82[JPT][hapmap]
rs1994073	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs1994074	0.82[JPT][hapmap];0.80[YRI][hapmap]
rs1994075	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs2101120	0.85[JPT][hapmap]
rs2128096	0.85[JPT][hapmap]
rs2869356	0.82[JPT][hapmap]
rs2869359	0.85[JPT][hapmap]
rs3960322	0.85[JPT][hapmap]
rs4327478	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs4348085	0.85[JPT][hapmap];0.80[YRI][hapmap]
rs4391024	0.83[YRI][hapmap]
rs4431218	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs4450923	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs4450924	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs4450925	0.80[YRI][hapmap]
rs4467559	0.82[JPT][hapmap]
rs4525966	0.85[JPT][hapmap];0.84[YRI][hapmap]
rs4535330	0.82[JPT][hapmap]
rs4693706	0.85[JPT][hapmap]
rs6531826	0.85[JPT][hapmap]
rs6531828	0.85[JPT][hapmap]
rs6814983	0.82[JPT][hapmap]
rs6828388	0.82[JPT][hapmap]
rs6828628	0.85[JPT][hapmap];0.84[YRI][hapmap]
rs6829120	0.85[JPT][hapmap]
rs6829628	0.85[JPT][hapmap]
rs6834664	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs6841899	0.85[JPT][hapmap]
rs6845803	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs73832788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662756	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7663198	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679025	0.82[JPT][hapmap]
rs7685458	0.85[JPT][hapmap]
rs7685580	0.85[JPT][hapmap]
rs971422	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86419800-86442200	Weak transcription	Left Ventricle	heart
2	chr4:86430200-86443200	Weak transcription	Spleen	Spleen
3	chr4:86430200-86468600	Weak transcription	Pancreas	Pancrea
4	chr4:86431800-86443600	Weak transcription	Fetal Lung	lung
5	chr4:86434600-86444000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:86435400-86449200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:86435600-86442800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:86436200-86444000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:86436400-86442000	Weak transcription	HSMMtube	muscle
10	chr4:86436400-86442400	Weak transcription	HSMM	muscle
11	chr4:86436400-86455600	Weak transcription	Gastric	stomach
12	chr4:86437400-86441800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr4:86439200-86442200	Weak transcription	Fetal Heart	heart
14	chr4:86440000-86443000	Genic enhancers	Primary B cells from peripheral blood	blood

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