Variant report

Variant	rs17010650
Chromosome Location	chr4:86628856-86628857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10516753	1.00[AMR][1000 genomes]
rs10516754	1.00[AMR][1000 genomes]
rs11931466	1.00[AMR][1000 genomes]
rs1482082	1.00[AMR][1000 genomes]
rs17010594	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010773	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17010775	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17010777	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1994082	1.00[AMR][1000 genomes]
rs6823467	1.00[AMR][1000 genomes]
rs6841314	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6851145	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs72972865	1.00[AMR][1000 genomes]
rs72972875	1.00[AMR][1000 genomes]
rs7656548	1.00[AMR][1000 genomes]
rs7684018	1.00[AMR][1000 genomes]
rs7695679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86625000-86629000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:86625000-86629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:86625400-86638200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:86628200-86629400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:86628400-86630400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr4:86628600-86629400	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr4:86628600-86629400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:86628600-86630000	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:86628600-86630000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:86628800-86629200	Flanking Active TSS	Primary B cells from peripheral blood	blood
11	chr4:86628800-86629200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:86628800-86629200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:86628800-86629200	Enhancers	GM12878-XiMat	blood
14	chr4:86628800-86629200	Enhancers	HUVEC	blood vessel
15	chr4:86628800-86629800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:86628800-86629800	Enhancers	HSMM	muscle
17	chr4:86628800-86629800	Enhancers	HSMMtube	muscle
18	chr4:86628800-86629800	Enhancers	NHDF-Ad	bronchial
19	chr4:86628800-86630000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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