Variant report

Variant	rs17010925
Chromosome Location	chr4:86713124-86713125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86713042..86715039-chr4:87371799..87373395,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11733669	0.85[CHD][hapmap]
rs28491994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55982788	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662174	0.94[ASW][hapmap]
rs7683733	0.94[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86701000-86728800	Weak transcription	Right Ventricle	heart
2	chr4:86701200-86715600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86704000-86715600	Enhancers	Osteobl	bone
4	chr4:86704000-86719800	Enhancers	NHDF-Ad	bronchial
5	chr4:86705800-86719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:86708400-86718200	Weak transcription	Aorta	Aorta
7	chr4:86709000-86714400	Weak transcription	NH-A	brain
8	chr4:86709000-86727000	Weak transcription	HSMMtube	muscle
9	chr4:86709200-86727000	Weak transcription	HSMM	muscle
10	chr4:86709400-86713600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:86709800-86714000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:86710400-86713800	Weak transcription	Fetal Intestine Small	intestine
13	chr4:86710800-86713200	Enhancers	Fetal Stomach	stomach
14	chr4:86711000-86719800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86711200-86715600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:86711600-86713200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:86711600-86715200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:86712200-86713200	Enhancers	Fetal Muscle Leg	muscle
19	chr4:86712200-86713400	Weak transcription	Fetal Lung	lung
20	chr4:86712400-86713800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:86712400-86718000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr4:86712600-86713200	Enhancers	Primary B cells from peripheral blood	blood
23	chr4:86712600-86713600	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:86712600-86713800	Weak transcription	NHLF	lung
25	chr4:86712600-86714400	Enhancers	Fetal Kidney	kidney
26	chr4:86712800-86713800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:86712800-86715200	Enhancers	Adipose Nuclei	Adipose
28	chr4:86712800-86715800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:86712800-86719400	Weak transcription	Right Atrium	heart
30	chr4:86713000-86713200	Genic enhancers	Primary B cells from cord blood	blood
31	chr4:86713000-86713400	Enhancers	HUVEC	blood vessel
32	chr4:86713000-86714200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:86713000-86714800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr4:86713000-86718000	Weak transcription	Left Ventricle	heart

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