Variant report

Variant	rs17011266
Chromosome Location	chr4:86872349-86872350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16996015	1.00[AMR][1000 genomes]
rs17011274	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4522858	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86851400-86874600	Weak transcription	HSMMtube	muscle
2	chr4:86851600-86874800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:86854000-86874200	Weak transcription	Fetal Stomach	stomach
4	chr4:86854000-86893000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:86854200-86880200	Weak transcription	Gastric	stomach
6	chr4:86854200-86893000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:86854200-86915800	Weak transcription	Left Ventricle	heart
8	chr4:86858800-86876600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:86859600-86874200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:86860400-86874800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:86861200-86873400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:86861800-86873400	Weak transcription	NHDF-Ad	bronchial
13	chr4:86862400-86877200	Weak transcription	Liver	Liver
14	chr4:86863600-86872400	Weak transcription	HUVEC	blood vessel
15	chr4:86863600-86872600	Weak transcription	Fetal Kidney	kidney
16	chr4:86863600-86902000	Weak transcription	Pancreas	Pancrea
17	chr4:86864000-86877000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:86864200-86873200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:86865000-86874200	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:86866600-86873200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:86866600-86874400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:86868200-86873400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:86868200-86874200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:86870200-86873400	Weak transcription	HSMM	muscle
25	chr4:86871200-86873600	Weak transcription	NHLF	lung
26	chr4:86871600-86872400	Weak transcription	Primary B cells from cord blood	blood
27	chr4:86871600-86872600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:86872200-86874200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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