Variant report

Variant	rs17011819
Chromosome Location	chr4:87276743-87276744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17011682	0.88[AFR][1000 genomes]
rs17011708	1.00[AFR][1000 genomes]
rs17011764	1.00[AFR][1000 genomes]
rs17011766	1.00[AFR][1000 genomes]
rs17011767	1.00[AFR][1000 genomes]
rs17011774	1.00[AFR][1000 genomes]
rs17011806	1.00[AFR][1000 genomes]
rs17011815	0.89[AFR][1000 genomes]
rs17011845	0.94[AFR][1000 genomes]
rs17011853	0.94[AFR][1000 genomes]
rs17011858	0.84[AFR][1000 genomes]
rs17011872	0.94[AFR][1000 genomes]
rs17011923	0.82[AFR][1000 genomes]
rs2001612	0.82[AFR][1000 genomes]
rs4283624	0.88[AFR][1000 genomes]
rs6844636	0.88[AFR][1000 genomes]
rs6844802	0.88[AFR][1000 genomes]
rs7661679	1.00[AFR][1000 genomes]
rs7667204	1.00[AFR][1000 genomes]
rs7669060	0.81[AFR][1000 genomes]
rs7675381	1.00[AFR][1000 genomes]
rs7678691	0.82[AFR][1000 genomes]
rs7691277	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv934210	chr4:87197339-87325578	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv461574	chr4:87239764-87279096	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv594788	chr4:87239764-87279096	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87260400-87277800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:87260800-87277200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:87264000-87277000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:87264200-87277800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:87264400-87280600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:87265600-87278000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:87266200-87278200	Weak transcription	Fetal Kidney	kidney
8	chr4:87269200-87279400	Weak transcription	Psoas Muscle	Psoas
9	chr4:87269600-87279400	Weak transcription	Ovary	ovary
10	chr4:87270800-87278000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:87270800-87279600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:87271200-87277200	Weak transcription	Brain Anterior Caudate	brain
13	chr4:87272200-87280600	Weak transcription	Adipose Nuclei	Adipose
14	chr4:87272600-87280600	Weak transcription	Fetal Lung	lung
15	chr4:87272800-87278000	Weak transcription	Brain Substantia Nigra	brain
16	chr4:87273800-87280600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:87274200-87277800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:87274200-87277800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:87274400-87277200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:87274400-87278200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:87274400-87278800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:87274400-87278800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:87274600-87277200	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:87274600-87277400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr4:87275400-87276800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:87275400-87279400	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:87275600-87276800	Weak transcription	Brain Germinal Matrix	brain
28	chr4:87275600-87302400	Weak transcription	Aorta	Aorta
29	chr4:87275800-87276800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:87275800-87276800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:87275800-87276800	Weak transcription	Brain Angular Gyrus	brain
32	chr4:87276000-87277600	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr4:87276400-87277000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:87276400-87277000	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr4:87276400-87277200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr4:87276400-87277600	Enhancers	Fetal Brain Male	brain
37	chr4:87276400-87281800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:87276600-87277000	Active TSS	Fetal Brain Female	brain

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