Variant report

Variant	rs17012943
Chromosome Location	chr3:23317924-23317925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1007332	1.00[CEU][hapmap]
rs10510537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13059557	0.83[ASN][1000 genomes]
rs13063183	0.81[ASN][1000 genomes]
rs13063986	0.86[ASN][1000 genomes]
rs13070865	0.83[ASN][1000 genomes]
rs13077333	0.89[ASN][1000 genomes]
rs13083654	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13084327	0.86[ASN][1000 genomes]
rs13087234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13089963	0.98[ASN][1000 genomes]
rs13090303	0.90[JPT][hapmap]
rs13095736	0.90[JPT][hapmap]
rs13095887	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13095960	0.95[ASN][1000 genomes]
rs13098494	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1495132	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17012823	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes]
rs17012834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17012844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17012852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17012861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012897	0.94[ASN][1000 genomes]
rs17012927	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012959	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17012969	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17012988	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17012998	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17013003	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17013023	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013026	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013029	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17013035	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013049	0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17013104	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17013116	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17013125	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17013128	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17013152	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17013216	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17013219	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17013223	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17013241	0.90[JPT][hapmap]
rs17013245	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17013286	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17013320	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs17013322	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs17345745	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs17404982	0.86[ASN][1000 genomes]
rs1985664	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs2014132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2291720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34108997	0.86[ASN][1000 genomes]
rs34239585	0.91[ASN][1000 genomes]
rs34259979	0.91[ASN][1000 genomes]
rs34646795	0.98[ASN][1000 genomes]
rs34928302	0.83[ASN][1000 genomes]
rs34972244	0.83[ASN][1000 genomes]
rs35024744	0.87[ASN][1000 genomes]
rs35038414	0.81[ASN][1000 genomes]
rs35059447	0.86[ASN][1000 genomes]
rs35098118	0.81[ASN][1000 genomes]
rs35236373	0.86[ASN][1000 genomes]
rs35320722	0.83[ASN][1000 genomes]
rs35743404	0.91[ASN][1000 genomes]
rs36004369	0.86[ASN][1000 genomes]
rs36123653	0.83[ASN][1000 genomes]
rs58844120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59365170	0.96[AMR][1000 genomes]
rs60709653	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs71322175	0.86[ASN][1000 genomes]
rs71322180	0.83[ASN][1000 genomes]
rs71322181	0.83[ASN][1000 genomes]
rs71322182	0.83[ASN][1000 genomes]
rs73044305	0.88[AMR][1000 genomes]
rs73044309	0.88[AMR][1000 genomes]
rs73044318	0.96[AMR][1000 genomes]
rs73044329	0.96[AMR][1000 genomes]
rs73044337	0.96[AMR][1000 genomes]
rs73044339	0.96[AMR][1000 genomes]
rs73050236	0.96[AMR][1000 genomes]
rs73050238	0.96[AMR][1000 genomes]
rs73050257	0.88[AMR][1000 genomes]
rs73050270	1.00[AMR][1000 genomes]
rs73050276	1.00[AMR][1000 genomes]
rs983288	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9857217	0.83[ASN][1000 genomes]
rs9873329	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23295200-23321800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
3	chr3:23302400-23321000	Weak transcription	Pancreas	Pancrea
4	chr3:23305600-23318400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:23314400-23319400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:23314400-23330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:23314600-23318600	Weak transcription	Fetal Kidney	kidney
8	chr3:23315400-23321800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:23315800-23318400	Weak transcription	A549	lung
10	chr3:23315800-23320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:23316800-23328000	Weak transcription	Primary B cells from cord blood	blood
12	chr3:23317000-23320600	Weak transcription	Brain Angular Gyrus	brain
13	chr3:23317000-23320800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:23317000-23324400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:23317400-23318600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:23317600-23318800	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:23317600-23324800	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links