Variant report

Variant	rs17013156
Chromosome Location	chr2:33722565-33722566
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33721073..33722993-chr2:33725616..33728253,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17013097	1.00[CEU][hapmap]
rs17013139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17013146	1.00[CEU][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs17013167	0.86[JPT][hapmap];1.00[TSI][hapmap]
rs17013170	0.86[CHB][hapmap]
rs6543718	1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv1829750	chr2:33704194-33740571	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3457478	chr2:33716912-33727989	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3457477	chr2:33717011-33728006	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3457479	chr2:33717011-33728006	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv828775	chr2:33717066-33727682	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33712200-33747600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:33714400-33726000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:33717000-33723600	Weak transcription	Lung	lung
5	chr2:33718400-33724200	Weak transcription	Right Atrium	heart
6	chr2:33719000-33730200	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:33719200-33725400	Enhancers	Brain Hippocampus Middle	brain
8	chr2:33719400-33725400	Enhancers	Primary hematopoietic stem cells	blood
9	chr2:33719400-33725400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr2:33719600-33724000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:33719600-33724800	Enhancers	Primary B cells from cord blood	blood
12	chr2:33719800-33723000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:33720000-33722600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:33720000-33725200	Enhancers	Fetal Heart	heart
15	chr2:33720400-33722600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:33720800-33723800	Weak transcription	Small Intestine	intestine
17	chr2:33721000-33723200	Weak transcription	Brain Anterior Caudate	brain
18	chr2:33721000-33723600	Weak transcription	Right Ventricle	heart
19	chr2:33721000-33723800	Weak transcription	NHDF-Ad	bronchial
20	chr2:33721200-33722800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:33721200-33724000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr2:33721400-33723800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:33721400-33723800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr2:33721600-33722600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr2:33721600-33722600	Enhancers	Psoas Muscle	Psoas
26	chr2:33721600-33724000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr2:33721600-33730000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:33721800-33722600	Enhancers	Fetal Lung	lung
29	chr2:33721800-33723600	Enhancers	Primary T cells from cord blood	blood
30	chr2:33721800-33723800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr2:33721800-33724000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr2:33721800-33724000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr2:33722000-33722800	Enhancers	Dnd41	blood
34	chr2:33722000-33723000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr2:33722000-33723600	Weak transcription	Left Ventricle	heart
36	chr2:33722000-33723800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr2:33722000-33724400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr2:33722200-33722600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:33722200-33723000	Active TSS	GM12878-XiMat	blood
40	chr2:33722200-33723800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr2:33722200-33724000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr2:33722400-33722600	Flanking Active TSS	HUVEC	blood vessel
43	chr2:33722400-33722800	Weak transcription	Brain Substantia Nigra	brain
44	chr2:33722400-33722800	Enhancers	A549	lung
45	chr2:33722400-33724000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links