Variant report

Variant	rs17013167
Chromosome Location	chr2:33729812-33729813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33729626..33732550-chr2:33733058..33735608,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17013139	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs17013146	1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs17013156	0.86[JPT][hapmap];1.00[TSI][hapmap]
rs17013170	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6543718	0.82[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs72804231	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv1829750	chr2:33704194-33740571	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33712200-33747600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:33719000-33730200	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:33721600-33730000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:33727000-33737000	Weak transcription	Primary B cells from cord blood	blood
6	chr2:33727800-33733600	Enhancers	Brain Hippocampus Middle	brain
7	chr2:33728400-33732000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:33728400-33732600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:33728800-33734200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:33728800-33750800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:33729000-33730200	Enhancers	Fetal Heart	heart
12	chr2:33729000-33737400	Enhancers	Brain Substantia Nigra	brain
13	chr2:33729200-33730000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:33729200-33736200	Enhancers	Brain Cingulate Gyrus	brain
15	chr2:33729400-33730000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr2:33729400-33730000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:33729400-33730000	Enhancers	Brain Angular Gyrus	brain
18	chr2:33729400-33730400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:33729600-33730000	Enhancers	Right Ventricle	heart
20	chr2:33729600-33730200	Enhancers	Psoas Muscle	Psoas
21	chr2:33729600-33731800	Strong transcription	GM12878-XiMat	blood
22	chr2:33729600-33732600	Enhancers	Brain Anterior Caudate	brain
23	chr2:33729800-33740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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