Variant report

Variant	rs17013184
Chromosome Location	chr2:33736388-33736389
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr2:33735679-33736757	IMR90	lung:	n/a	n/a
2	CEBPB	chr2:33736255-33736634	IMR90	lung:	n/a	chr2:33736454-33736466 chr2:33736594-33736606

Variant related genes	Relation type
RASGRP3	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17013059	1.00[EUR][1000 genomes]
rs17013106	1.00[AMR][1000 genomes]
rs17013133	1.00[AMR][1000 genomes]
rs17013135	1.00[AMR][1000 genomes]
rs17013143	1.00[AMR][1000 genomes]
rs17013163	1.00[AMR][1000 genomes]
rs17013185	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013186	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013202	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17013318	0.88[AFR][1000 genomes]
rs17013485	1.00[AMR][1000 genomes]
rs17013533	1.00[AMR][1000 genomes]
rs17013552	1.00[AMR][1000 genomes]
rs17013616	1.00[AMR][1000 genomes]
rs7577756	1.00[AMR][1000 genomes]
rs7589410	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv1829750	chr2:33704194-33740571	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33712200-33747600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:33727000-33737000	Weak transcription	Primary B cells from cord blood	blood
4	chr2:33728800-33750800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:33729000-33737400	Enhancers	Brain Substantia Nigra	brain
6	chr2:33729800-33740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:33730000-33751600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:33731400-33740200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:33732600-33745800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:33733400-33736600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:33735400-33736400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:33735400-33736400	Enhancers	NHLF	lung
13	chr2:33735400-33737200	Enhancers	Brain Hippocampus Middle	brain
14	chr2:33735400-33737400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:33735400-33737400	Genic enhancers	GM12878-XiMat	blood
16	chr2:33735400-33743800	Weak transcription	NHDF-Ad	bronchial
17	chr2:33735400-33761800	Weak transcription	Spleen	Spleen
18	chr2:33735600-33740000	Weak transcription	Fetal Heart	heart
19	chr2:33735800-33737000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr2:33735800-33738600	Weak transcription	Left Ventricle	heart
21	chr2:33735800-33740200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:33735800-33746800	Weak transcription	Psoas Muscle	Psoas
23	chr2:33735800-33746800	Weak transcription	Right Ventricle	heart
24	chr2:33735800-33754800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:33736000-33736400	Enhancers	Brain Angular Gyrus	brain
26	chr2:33736000-33736600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr2:33736200-33740000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr2:33736200-33740600	Weak transcription	Brain Anterior Caudate	brain
29	chr2:33736200-33742600	Weak transcription	Gastric	stomach

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