Variant report

Variant	rs17013186
Chromosome Location	chr2:33737628-33737629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:33737480-33737761	T-47D	breast:	n/a	chr2:33737688-33737700 chr2:33737665-33737680

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33736575..33738622-chr2:33744601..33747381,2	K562	blood:

Variant related genes	Relation type
RASGRP3	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17013106	1.00[AMR][1000 genomes]
rs17013133	1.00[AMR][1000 genomes]
rs17013135	1.00[AMR][1000 genomes]
rs17013143	1.00[AMR][1000 genomes]
rs17013163	1.00[AMR][1000 genomes]
rs17013184	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013185	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013202	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17013318	0.88[AFR][1000 genomes]
rs17013485	1.00[AMR][1000 genomes]
rs17013533	1.00[AMR][1000 genomes]
rs17013552	1.00[AMR][1000 genomes]
rs17013616	1.00[AMR][1000 genomes]
rs7577756	1.00[AMR][1000 genomes]
rs7589410	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv1829750	chr2:33704194-33740571	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33712200-33747600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:33728800-33750800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:33729800-33740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:33730000-33751600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:33731400-33740200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:33732600-33745800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:33735400-33743800	Weak transcription	NHDF-Ad	bronchial
9	chr2:33735400-33761800	Weak transcription	Spleen	Spleen
10	chr2:33735600-33740000	Weak transcription	Fetal Heart	heart
11	chr2:33735800-33738600	Weak transcription	Left Ventricle	heart
12	chr2:33735800-33740200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:33735800-33746800	Weak transcription	Psoas Muscle	Psoas
14	chr2:33735800-33746800	Weak transcription	Right Ventricle	heart
15	chr2:33735800-33754800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:33736200-33740000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr2:33736200-33740600	Weak transcription	Brain Anterior Caudate	brain
18	chr2:33736200-33742600	Weak transcription	Gastric	stomach
19	chr2:33736400-33741800	Weak transcription	Brain Angular Gyrus	brain
20	chr2:33736600-33740000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr2:33737000-33743800	Strong transcription	Primary B cells from cord blood	blood
22	chr2:33737000-33744400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr2:33737200-33738800	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:33737400-33738600	Weak transcription	Brain Substantia Nigra	brain
25	chr2:33737400-33740400	Weak transcription	Adipose Nuclei	Adipose
26	chr2:33737400-33749800	Strong transcription	GM12878-XiMat	blood
27	chr2:33737600-33760800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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