Variant report

Variant	rs17013664
Chromosome Location	chr12:86550783-86550784
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10858415	0.88[JPT][hapmap]
rs11103930	0.88[JPT][hapmap]
rs11830208	0.88[JPT][hapmap]
rs12303046	0.88[JPT][hapmap]
rs12580007	0.87[JPT][hapmap]
rs12581912	0.81[JPT][hapmap]
rs1586938	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1628799	0.81[CHB][hapmap]
rs1698787	0.83[CHB][hapmap]
rs17013643	0.86[JPT][hapmap]
rs17013647	0.85[CHD][hapmap];0.88[JPT][hapmap]
rs17013683	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17286498	1.00[TSI][hapmap]
rs17357212	1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2141927	0.81[JPT][hapmap]
rs2220782	0.82[CHB][hapmap]
rs2405792	0.86[ASN][1000 genomes]
rs2405931	0.88[JPT][hapmap]
rs2897275	0.88[JPT][hapmap]
rs2897277	0.88[JPT][hapmap]
rs2897278	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs4526834	0.88[JPT][hapmap]
rs57328168	0.89[ASN][1000 genomes]
rs58054764	0.87[ASN][1000 genomes]
rs60587165	0.88[ASN][1000 genomes]
rs61571841	0.89[ASN][1000 genomes]
rs73379423	0.88[ASN][1000 genomes]
rs7980126	0.88[JPT][hapmap]
rs839118	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs839137	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs839152	0.84[CHB][hapmap]
rs844434	0.81[CHB][hapmap]
rs863394	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv470311	chr12:86484366-86550783	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3442004	chr12:86514695-86599965	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2753278	chr12:86522507-86555154	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv510606	chr12:86545449-86555302	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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