Variant report

Variant	rs17013981
Chromosome Location	chr12:86774024-86774025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10745407	0.84[JPT][hapmap]
rs10745408	0.83[JPT][hapmap]
rs10776955	0.83[JPT][hapmap]
rs10858408	0.84[JPT][hapmap]
rs10858415	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10858423	0.82[ASN][1000 genomes]
rs11103930	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs11830208	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs11830448	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11835193	1.00[EUR][1000 genomes]
rs12302310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12302551	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12303046	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12319410	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12319593	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12579580	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12581639	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12581912	0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12582767	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1493415	0.81[JPT][hapmap]
rs1628799	1.00[JPT][hapmap]
rs1698787	0.84[JPT][hapmap]
rs17013792	0.82[YRI][hapmap]
rs17013858	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17014005	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17014008	1.00[JPT][hapmap]
rs17014009	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs17014020	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs17014026	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17040806	0.94[JPT][hapmap];0.94[YRI][hapmap]
rs1986602	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1986603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1994863	1.00[JPT][hapmap]
rs2141927	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs2220782	0.83[JPT][hapmap]
rs2405793	1.00[JPT][hapmap]
rs2405929	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2405931	0.89[JPT][hapmap]
rs2406116	0.83[JPT][hapmap]
rs2406118	0.83[JPT][hapmap]
rs2406122	0.83[JPT][hapmap]
rs2406123	0.84[JPT][hapmap]
rs2406127	0.84[JPT][hapmap]
rs2406128	0.83[JPT][hapmap]
rs2406160	0.84[JPT][hapmap]
rs2452807	0.84[JPT][hapmap]
rs2465144	0.84[JPT][hapmap]
rs2471560	0.83[JPT][hapmap]
rs2471568	0.84[JPT][hapmap]
rs2471569	0.84[JPT][hapmap]
rs2897240	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2897274	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2897275	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs2897277	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs2897278	0.88[JPT][hapmap]
rs4370997	0.84[JPT][hapmap]
rs4488269	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs4526834	0.89[JPT][hapmap]
rs4636736	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56170210	1.00[EUR][1000 genomes]
rs57977247	1.00[EUR][1000 genomes]
rs59690693	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902071	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61359740	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61950714	0.83[ASN][1000 genomes]
rs6538023	1.00[JPT][hapmap]
rs6538024	1.00[JPT][hapmap]
rs6538025	0.83[JPT][hapmap]
rs6538029	0.84[JPT][hapmap]
rs7135177	0.83[JPT][hapmap]
rs7138352	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7138786	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7301129	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs73385292	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73385293	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73387865	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953196	0.83[JPT][hapmap]
rs7953491	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7961251	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7964553	0.84[JPT][hapmap]
rs7973773	0.84[JPT][hapmap]
rs7977034	0.82[YRI][hapmap]
rs7980126	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs839104	0.83[JPT][hapmap]
rs839148	0.83[JPT][hapmap]
rs839149	0.84[JPT][hapmap]
rs839150	0.80[JPT][hapmap]
rs839151	0.84[JPT][hapmap]
rs839152	0.86[JPT][hapmap]
rs839153	0.84[JPT][hapmap]
rs839156	0.84[JPT][hapmap]
rs839157	0.83[JPT][hapmap]
rs839158	0.83[JPT][hapmap]
rs839159	0.84[JPT][hapmap]
rs839162	1.00[JPT][hapmap]
rs839165	0.83[JPT][hapmap]
rs839166	0.84[JPT][hapmap]
rs839168	0.84[JPT][hapmap]
rs839170	0.83[JPT][hapmap]
rs839171	0.83[JPT][hapmap]
rs844434	0.83[JPT][hapmap]
rs844435	0.83[JPT][hapmap]
rs863392	0.83[JPT][hapmap]
rs863395	0.83[JPT][hapmap]
rs865138	0.84[JPT][hapmap]
rs865721	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1053234	chr12:86701070-86774957	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041126	chr12:86736601-86774957	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv1051494	chr12:86736601-86776021	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86773200-86774400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr12:86773800-86774200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:86773800-86774400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr12:86773800-86774600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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