Variant report

Variant	rs17014009
Chromosome Location	chr12:86818425-86818426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10745407	0.84[JPT][hapmap]
rs10745408	0.83[JPT][hapmap]
rs10776955	0.83[JPT][hapmap]
rs10858408	0.84[JPT][hapmap]
rs10858415	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11103930	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11830208	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11830448	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11835193	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12302310	1.00[EUR][1000 genomes]
rs12302551	1.00[EUR][1000 genomes]
rs12303046	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs12319410	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12319593	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12579580	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12581639	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12581912	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes]
rs12582767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1493415	0.81[JPT][hapmap]
rs17013858	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17013893	0.86[AMR][1000 genomes]
rs17013976	0.82[AMR][1000 genomes]
rs17013981	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17014005	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17014008	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs17014020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17014026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17040806	0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1986602	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1986603	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs1994863	1.00[JPT][hapmap]
rs2141927	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2405793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2405929	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2405931	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs2406116	0.83[JPT][hapmap]
rs2406118	0.83[JPT][hapmap]
rs2406122	0.83[JPT][hapmap]
rs2406123	0.84[JPT][hapmap]
rs2406127	0.84[JPT][hapmap]
rs2406128	0.83[JPT][hapmap]
rs2406160	0.84[JPT][hapmap]
rs2452807	0.84[JPT][hapmap]
rs2465144	0.84[JPT][hapmap]
rs2471560	0.83[JPT][hapmap]
rs2471568	0.84[JPT][hapmap]
rs2471569	0.84[JPT][hapmap]
rs2897240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2897274	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2897275	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2897277	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2897278	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs4370997	0.84[JPT][hapmap]
rs4488269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4526834	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs4636736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170210	1.00[EUR][1000 genomes]
rs57977247	1.00[EUR][1000 genomes]
rs59690693	1.00[EUR][1000 genomes]
rs60902071	1.00[EUR][1000 genomes]
rs61359740	1.00[EUR][1000 genomes]
rs6538029	0.84[JPT][hapmap]
rs7135177	0.83[JPT][hapmap]
rs7138352	1.00[EUR][1000 genomes]
rs7138786	1.00[EUR][1000 genomes]
rs7301129	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73385292	1.00[EUR][1000 genomes]
rs73385293	1.00[EUR][1000 genomes]
rs73387865	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7953196	0.83[JPT][hapmap]
rs7953491	1.00[EUR][1000 genomes]
rs7961251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7964553	0.84[JPT][hapmap]
rs7973773	0.84[JPT][hapmap]
rs7980126	0.88[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links