Variant report

Variant	rs17014020
Chromosome Location	chr12:86868957-86868958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10745407	0.84[JPT][hapmap]
rs10745408	0.83[JPT][hapmap]
rs10776955	0.83[JPT][hapmap]
rs10858408	0.84[JPT][hapmap]
rs10858415	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs11103930	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs11616058	0.83[YRI][hapmap]
rs11829592	0.86[YRI][hapmap]
rs11830208	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs11834119	0.85[YRI][hapmap]
rs11835193	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12302310	1.00[EUR][1000 genomes]
rs12302551	1.00[EUR][1000 genomes]
rs12303046	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs12319410	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12319593	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12579580	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12581639	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12581912	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs12582767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17013981	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs17014008	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17014009	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17014026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17040806	0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1986602	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs1986603	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2141927	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2195229	0.83[YRI][hapmap]
rs2405793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2405929	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2405931	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs2406116	0.83[JPT][hapmap]
rs2406118	0.83[JPT][hapmap]
rs2406122	0.83[JPT][hapmap]
rs2406123	0.84[JPT][hapmap]
rs2406127	0.84[JPT][hapmap]
rs2406128	0.83[JPT][hapmap]
rs2406160	0.84[JPT][hapmap]
rs2897240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2897274	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2897275	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs2897277	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs2897278	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs4370997	0.84[JPT][hapmap]
rs4417380	0.85[YRI][hapmap]
rs4488269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs4526834	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs4636736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59690693	1.00[EUR][1000 genomes]
rs60902071	1.00[EUR][1000 genomes]
rs61359740	1.00[EUR][1000 genomes]
rs6538029	0.84[JPT][hapmap]
rs7135177	0.83[JPT][hapmap]
rs7138352	1.00[EUR][1000 genomes]
rs7301129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs73385292	1.00[EUR][1000 genomes]
rs73385293	1.00[EUR][1000 genomes]
rs73387865	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7485159	0.86[YRI][hapmap]
rs7953196	0.83[JPT][hapmap]
rs7961251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7964553	0.84[JPT][hapmap]
rs7973773	0.84[JPT][hapmap]
rs7977034	0.86[YRI][hapmap]
rs7980126	0.87[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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