Variant report

Variant	rs17014026
Chromosome Location	chr12:86880778-86880779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86873477..86875774-chr12:86880255..86882982,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10858415	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11103930	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11616058	0.84[YRI][hapmap]
rs11829592	0.84[YRI][hapmap]
rs11830208	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11834119	0.83[YRI][hapmap]
rs11835193	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12302310	1.00[EUR][1000 genomes]
rs12302551	1.00[EUR][1000 genomes]
rs12303046	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs12319410	0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs12319593	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12579580	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs12581639	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs12581912	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12582767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17013981	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17014005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17014008	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17014009	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17014020	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17040806	1.00[ASW][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1986602	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs1986603	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2141927	1.00[ASW][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs2195229	0.84[YRI][hapmap]
rs2405793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2405929	0.92[ASW][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2405931	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2406116	0.83[JPT][hapmap]
rs2406118	0.83[JPT][hapmap]
rs2406160	0.83[JPT][hapmap]
rs2897240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2897274	0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2897275	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2897277	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2897278	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs4370997	0.83[JPT][hapmap]
rs4417380	0.83[YRI][hapmap]
rs4488269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs4526834	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs4636736	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59690693	1.00[EUR][1000 genomes]
rs60902071	1.00[EUR][1000 genomes]
rs61359740	1.00[EUR][1000 genomes]
rs7138352	1.00[EUR][1000 genomes]
rs7301129	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs73385292	1.00[EUR][1000 genomes]
rs73385293	1.00[EUR][1000 genomes]
rs73387865	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7485159	0.84[YRI][hapmap]
rs7961251	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977034	0.84[YRI][hapmap]
rs7980126	0.88[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv275003	chr12:86880778-86890003	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86878600-86882800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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