Variant report

Variant	rs17015649
Chromosome Location	chr3:25077714-25077715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56710119	1.00[AMR][1000 genomes]
rs61640000	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25069600-25078200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:25070000-25078400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:25070000-25086600	Weak transcription	Left Ventricle	heart
4	chr3:25074200-25083400	Weak transcription	Right Atrium	heart
5	chr3:25075000-25078000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:25075200-25086600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:25076200-25080000	Weak transcription	Brain Anterior Caudate	brain
8	chr3:25076400-25080400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:25076800-25078800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:25076800-25079200	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:25077000-25078600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:25077000-25078800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:25077200-25077800	Enhancers	NH-A	brain
14	chr3:25077200-25079800	Enhancers	NHDF-Ad	bronchial
15	chr3:25077200-25080400	Enhancers	NHLF	lung
16	chr3:25077400-25077800	Weak transcription	Fetal Lung	lung
17	chr3:25077400-25077800	Weak transcription	Fetal Stomach	stomach
18	chr3:25077400-25078200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:25077400-25078600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:25077400-25078800	Weak transcription	Osteobl	bone
21	chr3:25077600-25078400	Weak transcription	Aorta	Aorta
22	chr3:25077600-25078600	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links