Variant report

Variant	rs17016164
Chromosome Location	chr3:25348463-25348464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1483839	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1564744	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17016150	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17016182	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17016185	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17016213	0.85[AMR][1000 genomes]
rs17016253	0.83[AMR][1000 genomes]
rs17016257	0.83[AMR][1000 genomes]
rs2885837	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv876632	chr3:25325479-25366205	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25345600-25349200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:25348200-25349200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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