Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11709169	0.89[EUR][1000 genomes]
rs11720675	0.92[ASN][1000 genomes]
rs1436251	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1483837	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17016187	0.88[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs17588596	0.89[CHB][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap]
rs1905465	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1984597	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164476	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6550961	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6771956	0.89[EUR][1000 genomes]
rs6774199	0.92[EUR][1000 genomes]
rs6799363	0.90[EUR][1000 genomes]
rs7615609	0.89[EUR][1000 genomes]
rs7649070	0.87[ASN][1000 genomes]
rs9818293	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822411	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9837851	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848513	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9877461	0.88[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25366400-25367200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:25366800-25367200	Enhancers	Left Ventricle	heart

Quick Search: