Variant report

Variant	rs17016283
Chromosome Location	chr1:210650464-210650465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11119513	1.00[CHD][hapmap]
rs12060228	1.00[CHD][hapmap]
rs17016287	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753224	0.89[AFR][1000 genomes]
rs55798299	1.00[ASN][1000 genomes]
rs7555818	0.84[ASW][hapmap];0.95[LWK][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210631000-210653800	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:210640000-210650600	Weak transcription	Left Ventricle	heart
4	chr1:210640000-210660400	Weak transcription	Aorta	Aorta
5	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:210645000-210653600	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:210645400-210652200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:210646000-210653400	Weak transcription	HSMM	muscle
9	chr1:210648000-210656400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:210648400-210658800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:210648600-210650600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:210648800-210660400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:210649000-210651200	Strong transcription	HSMMtube	muscle
14	chr1:210650200-210650800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:210650200-210652600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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