Variant report

Variant	rs17016320
Chromosome Location	chr3:25417956-25417957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1026930	0.86[EUR][1000 genomes]
rs11925814	0.93[EUR][1000 genomes]
rs1483835	0.81[EUR][1000 genomes]
rs17016253	0.81[EUR][1000 genomes]
rs17016257	0.81[EUR][1000 genomes]
rs17016308	1.00[EUR][1000 genomes]
rs17016328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016334	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016356	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2086790	0.93[EUR][1000 genomes]
rs56167545	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56397774	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57064248	0.93[EUR][1000 genomes]
rs59034168	0.97[EUR][1000 genomes]
rs59064731	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60112210	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60519915	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60838657	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60917922	0.93[EUR][1000 genomes]
rs61165804	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61558701	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6769438	0.81[EUR][1000 genomes]
rs73156056	0.93[EUR][1000 genomes]
rs73156093	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157807	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73157810	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820454	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25416000-25420200	Enhancers	Fetal Intestine Large	intestine
2	chr3:25417600-25421200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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