Variant report

Variant	rs17016349
Chromosome Location	chr1:210672629-210672630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10735507	0.85[CHB][hapmap]
rs10746425	0.80[JPT][hapmap]
rs10863836	0.82[JPT][hapmap]
rs10863837	0.81[JPT][hapmap]
rs10863838	0.81[JPT][hapmap]
rs11119516	0.81[JPT][hapmap]
rs12086353	0.98[ASN][1000 genomes]
rs12748886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4545340	0.84[CHB][hapmap]
rs9943186	0.81[JPT][hapmap]
rs9943201	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210653800-210678800	Weak transcription	HSMM	muscle
3	chr1:210668000-210674000	Weak transcription	Aorta	Aorta
4	chr1:210670200-210673200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:210670200-210678800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:210672400-210672800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:210672400-210675200	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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