Variant report

Variant	rs17016356
Chromosome Location	chr3:25427985-25427986
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1026930	0.84[EUR][1000 genomes]
rs11925814	0.90[EUR][1000 genomes]
rs1483835	0.83[EUR][1000 genomes]
rs17016253	0.83[EUR][1000 genomes]
rs17016257	0.83[EUR][1000 genomes]
rs17016308	0.97[EUR][1000 genomes]
rs17016320	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17016328	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17016334	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17016343	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2086790	0.90[EUR][1000 genomes]
rs56167545	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56397774	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57064248	0.90[EUR][1000 genomes]
rs59034168	1.00[EUR][1000 genomes]
rs59064731	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60112210	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60519915	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60838657	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60917922	0.90[EUR][1000 genomes]
rs61165804	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61558701	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6769438	0.83[EUR][1000 genomes]
rs73156056	0.90[EUR][1000 genomes]
rs73156093	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157807	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73157810	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73820454	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25427000-25428000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:25427000-25428400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:25427400-25428400	Enhancers	Fetal Kidney	kidney
4	chr3:25427400-25429200	Enhancers	Fetal Muscle Leg	muscle
5	chr3:25427800-25429000	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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