Variant report

Variant	rs17016740
Chromosome Location	chr1:210881531-210881532
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12401476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12401932	0.82[CHB][hapmap]
rs12402520	0.82[CHB][hapmap]
rs12407959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12410100	0.95[ASN][1000 genomes]
rs17016714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17016734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17016743	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17016759	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210846400-210884600	Weak transcription	Ovary	ovary
2	chr1:210857200-210882600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:210864400-210889800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210866800-210884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:210869800-210882600	Weak transcription	Brain Anterior Caudate	brain
6	chr1:210871200-210932000	Weak transcription	HSMM	muscle
7	chr1:210874200-210887400	Weak transcription	HSMMtube	muscle
8	chr1:210877200-210888400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:210878600-210883600	Weak transcription	Fetal Stomach	stomach
10	chr1:210879000-210881600	Enhancers	Liver	Liver
11	chr1:210879400-210881800	Enhancers	A549	lung
12	chr1:210879400-210882200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:210879600-210884200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:210880000-210882200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr1:210880200-210881600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr1:210880400-210881600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:210880400-210881600	Enhancers	Gastric	stomach
18	chr1:210880400-210881600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr1:210880600-210881800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:210880600-210881800	Enhancers	Brain Angular Gyrus	brain
21	chr1:210881200-210882000	Enhancers	HUES64 Cell Line	embryonic stem cell

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