Variant report
| Variant | rs17016916 |
|---|---|
| Chromosome Location | chr4:143823303-143823304 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11931930 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11936161 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11938074 | 0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11942298 | 1.00[AMR][1000 genomes] |
| rs11945219 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11945221 | 0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11946952 | 0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17016965 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17016976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60837660 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6814142 | 0.97[AFR][1000 genomes] |
| rs72937983 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72939905 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72939914 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72939918 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72939930 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7435181 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7657815 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7674856 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7694316 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880174 | chr4:143639498-143848024 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv880175 | chr4:143779613-143892252 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv10580 | chr4:143794158-143856359 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv830102 | chr4:143820268-143953611 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv3449750 | chr4:143823052-143827350 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:143822600-143831200 | Weak transcription | Stomach Smooth Muscle | stomach |
