Variant report
| Variant | rs17016976 |
|---|---|
| Chromosome Location | chr4:143856031-143856032 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11931930 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11936161 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11938074 | 1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11942298 | 1.00[AMR][1000 genomes] |
| rs11945219 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11945221 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11946952 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17016916 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17016965 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60837660 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6814142 | 0.97[AFR][1000 genomes] |
| rs72937983 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72939905 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72939914 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72939918 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72939930 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7435181 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7657815 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7674856 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7694316 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880175 | chr4:143779613-143892252 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv10580 | chr4:143794158-143856359 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv830102 | chr4:143820268-143953611 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:143856000-143856200 | Enhancers | Aorta | Aorta |
