Variant report

Variant	rs17017087
Chromosome Location	chr1:211146116-211146117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10494930	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs12081478	0.83[AFR][1000 genomes]
rs12082952	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12084848	0.85[LWK][hapmap];0.91[MKK][hapmap];0.81[YRI][hapmap]
rs12087790	0.84[AFR][1000 genomes]
rs17017085	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs17017120	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2062674	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4951489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4951684	0.80[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4951685	0.93[ASN][1000 genomes]
rs4951690	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951691	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951697	0.81[CHD][hapmap]
rs4951703	0.84[ASN][1000 genomes]
rs4951705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs58216144	0.81[AFR][1000 genomes]
rs59431775	0.96[AFR][1000 genomes]
rs6671566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7556274	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524740	chr1:211143108-211155614	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17017087	RD3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211123000-211152000	Weak transcription	HSMM	muscle

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