Variant report

Variant	rs17017167
Chromosome Location	chr1:211256662-211256663
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1338348	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17017208	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs17188832	1.00[AFR][1000 genomes]
rs17188860	1.00[AFR][1000 genomes]
rs17267435	1.00[AFR][1000 genomes]
rs4072437	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4951500	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4951501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951714	1.00[CHB][hapmap]
rs4951715	0.88[ASN][1000 genomes]
rs4951717	0.98[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211249400-211257800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:211249400-211261200	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:211249400-211263600	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211249800-211257000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:211250000-211271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211250400-211265000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:211255400-211256800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:211255400-211259800	Strong transcription	HSMM	muscle
9	chr1:211255800-211256800	Strong transcription	Brain Angular Gyrus	brain
10	chr1:211256000-211256800	Strong transcription	Brain Cingulate Gyrus	brain
11	chr1:211256000-211263400	Strong transcription	HSMMtube	muscle
12	chr1:211256200-211256800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr1:211256400-211256800	Active TSS	A549	lung
14	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:211256600-211257800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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