Variant report

Variant	rs17019314
Chromosome Location	chr3:81871536-81871537
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17019195	1.00[AMR][1000 genomes]
rs17019216	1.00[AMR][1000 genomes]
rs17019315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17019334	1.00[AMR][1000 genomes]
rs6764071	1.00[AMR][1000 genomes]
rs6767507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6771364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781421	1.00[AMR][1000 genomes]
rs6809927	1.00[AMR][1000 genomes]
rs7645838	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81852400-81872200	Weak transcription	Left Ventricle	heart
2	chr3:81866400-81872400	Weak transcription	Psoas Muscle	Psoas
3	chr3:81867000-81872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:81867200-81872200	Weak transcription	Pancreas	Pancrea
5	chr3:81870000-81873200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:81870800-81872200	Enhancers	Dnd41	blood
7	chr3:81870800-81872600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:81871000-81871600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:81871000-81871600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:81871000-81871600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:81871000-81871800	Enhancers	Brain Anterior Caudate	brain
12	chr3:81871000-81872000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:81871000-81873800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:81871000-81874400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:81871200-81871600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:81871200-81871600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:81871200-81871600	Enhancers	Brain Substantia Nigra	brain
18	chr3:81871200-81871800	Enhancers	Brain Hippocampus Middle	brain
19	chr3:81871200-81872600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:81871400-81871600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr3:81871400-81872400	Weak transcription	Fetal Heart	heart
22	chr3:81871400-81872800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links