Variant report

Variant	rs17020652
Chromosome Location	chr2:37623141-37623142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:37622836..37623806-chr2:38104284..38105511,3	MCF-7	breast:
2	chr2:37622799..37624882-chr2:38117428..38119710,2	MCF-7	breast:
3	chr2:37622553..37623459-chr2:38036724..38037237,2	MCF-7	breast:
4	chr2:37622806..37623442-chr2:38058313..38059174,2	K562	blood:
5	chr2:37622871..37623869-chr2:38104307..38105433,6	K562	blood:
6	chr2:37622662..37623680-chr2:38059375..38060179,5	K562	blood:
7	chr2:37622702..37623753-chr2:38104472..38105305,4	MCF-7	breast:
8	chr2:37622738..37623684-chr2:38059106..38060344,5	MCF-7	breast:
9	chr2:37618498..37621396-chr2:37621786..37624740,2	K562	blood:

No data

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10187899	1.00[ASN][1000 genomes]
rs11675003	1.00[ASN][1000 genomes]
rs11675007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677182	1.00[ASN][1000 genomes]
rs11684584	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690616	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694420	1.00[ASN][1000 genomes]
rs11694425	1.00[ASN][1000 genomes]
rs11695993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13383093	1.00[ASN][1000 genomes]
rs17020628	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17020654	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020741	1.00[ASN][1000 genomes]
rs4390746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670710	1.00[ASN][1000 genomes]
rs4670712	1.00[ASN][1000 genomes]
rs4670715	1.00[ASN][1000 genomes]
rs4670716	1.00[ASN][1000 genomes]
rs56010298	1.00[ASN][1000 genomes]
rs56049744	1.00[ASN][1000 genomes]
rs58023647	1.00[ASN][1000 genomes]
rs58400888	1.00[ASN][1000 genomes]
rs60243594	1.00[ASN][1000 genomes]
rs60383893	1.00[ASN][1000 genomes]
rs6713585	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725241	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728425	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924639	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924652	1.00[ASN][1000 genomes]
rs73924654	1.00[ASN][1000 genomes]
rs950296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37617800-37623200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:37617800-37623200	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:37618200-37623400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:37618200-37623400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:37618400-37623200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:37618400-37623200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:37618400-37623200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:37618400-37623400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:37619000-37623600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:37620200-37623400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:37620600-37625600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:37621000-37623400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:37621400-37623400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr2:37622200-37623600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:37622400-37624200	Weak transcription	GM12878-XiMat	blood
16	chr2:37622800-37623600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr2:37622800-37623600	Enhancers	A549	lung
18	chr2:37623000-37623600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:37623000-37623600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:37623000-37623600	Enhancers	Rectal Smooth Muscle	rectum
21	chr2:37623000-37623600	Enhancers	HUVEC	blood vessel
22	chr2:37623000-37624400	Enhancers	Cortex derived primary cultured neurospheres	brain

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