Variant report

Variant	rs17020741
Chromosome Location	chr2:37662504-37662505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10187899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675003	1.00[ASN][1000 genomes]
rs11675007	1.00[ASN][1000 genomes]
rs11677182	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677544	1.00[EUR][1000 genomes]
rs11677671	1.00[EUR][1000 genomes]
rs11684584	1.00[ASN][1000 genomes]
rs11688569	1.00[EUR][1000 genomes]
rs11690616	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11694420	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695993	1.00[ASN][1000 genomes]
rs13383093	1.00[ASN][1000 genomes]
rs17020628	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17020652	1.00[ASN][1000 genomes]
rs17020654	1.00[ASN][1000 genomes]
rs17020657	1.00[ASN][1000 genomes]
rs4390746	1.00[ASN][1000 genomes]
rs4670197	1.00[ASN][1000 genomes]
rs4670199	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4670202	1.00[ASN][1000 genomes]
rs4670706	1.00[ASN][1000 genomes]
rs4670707	1.00[ASN][1000 genomes]
rs4670710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670718	1.00[EUR][1000 genomes]
rs56010298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56049744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58023647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58400888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58486146	1.00[EUR][1000 genomes]
rs60243594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60383893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713585	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6725241	1.00[ASN][1000 genomes]
rs6728425	1.00[ASN][1000 genomes]
rs6753813	1.00[ASN][1000 genomes]
rs73924639	1.00[ASN][1000 genomes]
rs73924652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924654	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37662000-37662600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:37662000-37663600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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