Variant report

Variant	rs17021064
Chromosome Location	chr2:37816428-37816429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37816065..37817832-chr2:37818694..37820590,2	MCF-7	breast:
2	chr2:37813986..37816982-chr2:37818783..37822459,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10184610	0.83[ASN][1000 genomes]
rs10490284	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2191845	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191847	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2215605	0.89[EUR][1000 genomes]
rs62134989	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6719698	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6761587	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2757793	chr2:37796654-38138939	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2759043	chr2:37796654-38138939	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv833825	chr2:37808169-37985917	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37808800-37818000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:37809400-37817600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:37809600-37816600	Enhancers	Osteobl	bone
4	chr2:37809800-37818400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:37810000-37817400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:37810000-37817600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:37810200-37817800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:37811200-37817800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:37811400-37818400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:37811600-37817800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:37812000-37817400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr2:37812000-37817600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr2:37812200-37817800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:37812400-37816800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:37813000-37817800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr2:37813200-37817400	Enhancers	HSMM	muscle
17	chr2:37813400-37817200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:37813600-37817200	Weak transcription	Right Atrium	heart
19	chr2:37813600-37817400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:37813600-37818000	Enhancers	NHDF-Ad	bronchial
21	chr2:37813600-37819200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr2:37813800-37817800	Enhancers	NHEK	skin
23	chr2:37813800-37818000	Enhancers	HMEC	breast
24	chr2:37814000-37817400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:37814000-37818000	Enhancers	NH-A	brain
26	chr2:37814200-37817400	Weak transcription	Fetal Stomach	stomach
27	chr2:37814200-37817400	Enhancers	HSMMtube	muscle
28	chr2:37814200-37819000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr2:37814200-37819000	Enhancers	A549	lung
30	chr2:37814200-37819400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr2:37814400-37816600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:37814400-37817200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr2:37814400-37817200	Weak transcription	Adipose Nuclei	Adipose
34	chr2:37814400-37817200	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:37814400-37817200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr2:37814400-37817400	Weak transcription	Aorta	Aorta
37	chr2:37814400-37818600	Enhancers	HUVEC	blood vessel
38	chr2:37814600-37817200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr2:37814600-37817200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr2:37814600-37817200	Weak transcription	Fetal Thymus	thymus
41	chr2:37814600-37817200	Weak transcription	Thymus	Thymus
42	chr2:37814600-37817200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr2:37814600-37818000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr2:37814600-37819200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr2:37814800-37817200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr2:37814800-37817200	Weak transcription	Primary T cells from cord blood	blood
47	chr2:37815000-37817200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr2:37815000-37817200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:37815000-37817400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr2:37815000-37818800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links