Variant report

Variant	rs17022278
Chromosome Location	chr4:147925211-147925212
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10024453	1.00[EUR][1000 genomes]
rs17022199	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022252	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022283	1.00[EUR][1000 genomes]
rs17022290	1.00[EUR][1000 genomes]
rs17022301	1.00[EUR][1000 genomes]
rs17022338	1.00[EUR][1000 genomes]
rs17022379	1.00[EUR][1000 genomes]
rs17022394	1.00[EUR][1000 genomes]
rs17022406	0.94[EUR][1000 genomes]
rs1866017	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377394	0.94[EUR][1000 genomes]
rs28633372	1.00[EUR][1000 genomes]
rs4328934	0.82[AFR][1000 genomes]
rs57807775	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58681766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59505824	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7441939	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147923000-147926600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:147923400-147926000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:147923400-147926000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:147923600-147925800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:147923600-147925800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:147925000-147925400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:147925200-147925800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:147925200-147926000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:147925200-147926000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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