Variant report
| Variant | rs17022301 |
|---|---|
| Chromosome Location | chr4:147940435-147940436 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:147939892..147940886-chr4:148017933..148018857,4 | K562 | blood: | |
| 2 | chr4:147939970..147940883-chr4:148787667..148788628,4 | K562 | blood: | |
| 3 | chr4:147939981..147941106-chr4:148014945..148015994,5 | MCF-7 | breast: | |
| 4 | chr4:147939974..147940929-chr4:148017718..148018845,5 | MCF-7 | breast: | |
| 5 | chr4:147940120..147940905-chr4:148014962..148015896,2 | MCF-7 | breast: | |
| 6 | chr4:147939977..147940938-chr4:148015247..148015842,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10024453 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17022199 | 1.00[EUR][1000 genomes] |
| rs17022252 | 1.00[EUR][1000 genomes] |
| rs17022256 | 1.00[EUR][1000 genomes] |
| rs17022278 | 1.00[EUR][1000 genomes] |
| rs17022283 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17022290 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17022338 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17022379 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17022394 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17022406 | 0.94[EUR][1000 genomes] |
| rs1866017 | 1.00[EUR][1000 genomes] |
| rs28377394 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28633372 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57807775 | 1.00[EUR][1000 genomes] |
| rs58681766 | 1.00[EUR][1000 genomes] |
| rs59505824 | 1.00[EUR][1000 genomes] |
| rs7441939 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880240 | chr4:147905897-148032003 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv461676 | chr4:147927227-147962432 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv595652 | chr4:147927227-147962432 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1016598 | chr4:147931134-148012064 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:147940000-147941200 | Enhancers | Hela-S3 | cervix |
