Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10011414	0.84[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs10029336	0.84[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs10029415	1.00[AMR][1000 genomes]
rs10032981	1.00[AMR][1000 genomes]
rs13353682	1.00[AMR][1000 genomes]
rs13434880	1.00[AMR][1000 genomes]
rs28418624	1.00[AMR][1000 genomes]
rs28419085	1.00[AMR][1000 genomes]
rs28427468	1.00[AMR][1000 genomes]
rs28485213	1.00[AMR][1000 genomes]
rs28489480	1.00[AMR][1000 genomes]
rs28490972	1.00[AMR][1000 genomes]
rs28580106	1.00[AMR][1000 genomes]
rs28657904	1.00[AMR][1000 genomes]
rs28688131	1.00[AMR][1000 genomes]
rs28690223	1.00[AMR][1000 genomes]
rs28698911	1.00[AMR][1000 genomes]
rs73853260	1.00[AMR][1000 genomes]
rs73853282	1.00[AMR][1000 genomes]
rs73853292	1.00[AMR][1000 genomes]
rs73856341	1.00[AMR][1000 genomes]
rs73856355	1.00[AMR][1000 genomes]
rs73856360	1.00[AMR][1000 genomes]
rs73856361	1.00[AMR][1000 genomes]
rs9995564	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147953800-147954600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr4:147954200-147954800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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