Variant report

Variant	rs17022359
Chromosome Location	chr3:85095264-85095265
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10490896	0.81[YRI][hapmap]
rs10490897	0.81[YRI][hapmap]
rs1376937	0.89[AMR][1000 genomes]
rs17022343	0.81[YRI][hapmap]
rs17022413	0.89[AMR][1000 genomes]
rs17022521	0.89[AMR][1000 genomes]
rs17022531	0.89[AMR][1000 genomes]
rs17022571	0.89[AMR][1000 genomes]
rs1901545	0.89[AMR][1000 genomes]
rs28658170	0.89[AMR][1000 genomes]
rs28706252	0.89[AMR][1000 genomes]
rs57628546	0.89[AMR][1000 genomes]
rs58051057	0.89[AMR][1000 genomes]
rs58222692	0.89[AMR][1000 genomes]
rs59867516	0.89[AMR][1000 genomes]
rs59905205	0.89[AMR][1000 genomes]
rs59907126	0.89[AMR][1000 genomes]
rs60184399	0.89[AMR][1000 genomes]
rs60222151	0.89[AMR][1000 genomes]
rs60319509	0.89[AMR][1000 genomes]
rs6804299	0.89[AMR][1000 genomes]
rs72903365	0.89[AMR][1000 genomes]
rs72903370	0.89[AMR][1000 genomes]
rs72903381	0.89[AMR][1000 genomes]
rs72905294	0.89[AMR][1000 genomes]
rs72905295	0.89[AMR][1000 genomes]
rs72907103	0.89[AMR][1000 genomes]
rs72907149	0.89[AMR][1000 genomes]
rs72907158	0.89[AMR][1000 genomes]
rs72907161	0.89[AMR][1000 genomes]
rs72907167	0.89[AMR][1000 genomes]
rs72907169	0.89[AMR][1000 genomes]
rs72907192	0.89[AMR][1000 genomes]
rs7614097	0.89[AMR][1000 genomes]
rs7643603	0.89[AMR][1000 genomes]
rs7644008	0.89[AMR][1000 genomes]
rs9917693	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85091600-85095400	Weak transcription	Fetal Brain Male	brain
2	chr3:85091600-85095800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:85092200-85099400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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