Variant report

Variant	rs17022379
Chromosome Location	chr4:147960336-147960337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10024453	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022199	1.00[EUR][1000 genomes]
rs17022252	1.00[EUR][1000 genomes]
rs17022256	1.00[EUR][1000 genomes]
rs17022278	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17022283	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17022290	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17022301	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17022338	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17022394	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17022406	0.94[EUR][1000 genomes]
rs1866017	1.00[EUR][1000 genomes]
rs28377394	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs28633372	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57807775	1.00[EUR][1000 genomes]
rs58681766	1.00[EUR][1000 genomes]
rs59505824	1.00[EUR][1000 genomes]
rs7441939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147955800-147961200	Weak transcription	Brain Substantia Nigra	brain
2	chr4:147959400-147962600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:147959600-147961200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:147959600-147962600	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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