Variant report

Variant	rs17022399
Chromosome Location	chr4:147969178-147969179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10519860	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11728438	0.95[EUR][1000 genomes]
rs11732200	0.95[EUR][1000 genomes]
rs11734148	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117377	0.95[EUR][1000 genomes]
rs1437268	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1437269	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17022319	0.95[EUR][1000 genomes]
rs17022322	0.95[EUR][1000 genomes]
rs17022341	0.95[EUR][1000 genomes]
rs17022347	0.95[EUR][1000 genomes]
rs17022356	0.95[EUR][1000 genomes]
rs17022364	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17022369	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34077264	0.95[EUR][1000 genomes]
rs34693058	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34796695	0.95[EUR][1000 genomes]
rs34866575	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34995803	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35228001	0.95[EUR][1000 genomes]
rs35347139	0.95[EUR][1000 genomes]
rs3747683	0.95[EUR][1000 genomes]
rs3747684	0.95[EUR][1000 genomes]
rs3747685	0.95[EUR][1000 genomes]
rs3747686	0.95[EUR][1000 genomes]
rs3747687	0.91[EUR][1000 genomes]
rs3747688	0.97[EUR][1000 genomes]
rs3789145	0.93[EUR][1000 genomes]
rs3789146	0.93[EUR][1000 genomes]
rs3789148	0.95[EUR][1000 genomes]
rs3804193	0.95[EUR][1000 genomes]
rs59064455	0.95[EUR][1000 genomes]
rs6537439	0.95[EUR][1000 genomes]
rs6537441	0.95[EUR][1000 genomes]
rs6537443	0.95[EUR][1000 genomes]
rs6537447	0.95[EUR][1000 genomes]
rs6812589	0.95[EUR][1000 genomes]
rs6813768	0.95[EUR][1000 genomes]
rs6814170	0.95[EUR][1000 genomes]
rs6817074	0.95[EUR][1000 genomes]
rs6824712	0.95[EUR][1000 genomes]
rs6824739	0.95[EUR][1000 genomes]
rs6836532	0.95[EUR][1000 genomes]
rs71616518	0.95[EUR][1000 genomes]
rs7654570	0.95[EUR][1000 genomes]
rs7677828	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147965800-147970400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:147967800-147971800	Weak transcription	Fetal Kidney	kidney
3	chr4:147968400-147971800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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